AATranslator
AATranslator.InvalidAminoAcid
AATranslator.InvalidAminoAcid.InvalidAminoAcidByte
AATranslator.InvalidAminoAcid.InvalidAminoAcidChar
AATranslator.InvalidAminoAcid.InvalidAminoAcidInt
ASRVByteAAGene
AminoAcid
ByteAminoAcid
Configuration
DiagonalRecombiner
DirectedGraph
EdgeListEdge
EdgeListGraph
EdgeListGraphTopology
EdgeListNode
FASTAParser
Gene
GeneDuplicator
GeneKiller
Genome
GenomeEvolver
GenomeRearranger
GenomeVisitor
GraphEdge
GraphNode
GraphTopology
GraphTopologyEvent
JTT
LECParser
Lineage
LineageFork
LineageVisitor
RandomSelection
Recombiner
StrResultVisitor
Substitutable
SubstitutionMatrix
Visitable
Visitor
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