edu.uconn.mcb.lineageevolver
Interfaces 
AminoAcid
Gene
Substitutable
SubstitutionMatrix
Classes 
AATranslator
ASRVByteAAGene
ByteAminoAcid
DiagonalRecombiner
GeneDuplicator
GeneKiller
Genome
GenomeEvolver
GenomeRearranger
GenomeVisitor
JTT
Lineage
LineageFork
LineageVisitor
RandomSelection
Recombiner
Exceptions 
AATranslator.InvalidAminoAcid
AATranslator.InvalidAminoAcid.InvalidAminoAcidByte
AATranslator.InvalidAminoAcid.InvalidAminoAcidChar
AATranslator.InvalidAminoAcid.InvalidAminoAcidInt