Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV
NEXT
FRAMES
NO FRAMES
All Classes
Hierarchy For Package edu.uconn.mcb.lineageevolver
Package Hierarchies:
All Packages
Class Hierarchy
class java.lang.Object
class edu.uconn.mcb.lineageevolver.
AATranslator
class edu.uconn.mcb.lineageevolver.
ASRVByteAAGene
(implements edu.uconn.mcb.lineageevolver.
Gene
)
class edu.uconn.mcb.lineageevolver.
ByteAminoAcid
(implements edu.uconn.mcb.lineageevolver.
AminoAcid
, edu.uconn.mcb.lineageevolver.
Substitutable
)
class edu.uconn.mcb.lineageevolver.
Genome
(implements java.lang.Cloneable, edu.uconn.mcb.lineageevolver.misc.
Visitable
)
class edu.uconn.mcb.lineageevolver.
GenomeVisitor
(implements edu.uconn.mcb.lineageevolver.misc.
Visitor
)
class edu.uconn.mcb.lineageevolver.
GeneDuplicator
class edu.uconn.mcb.lineageevolver.
GeneKiller
class edu.uconn.mcb.lineageevolver.
GenomeEvolver
class edu.uconn.mcb.lineageevolver.
GenomeRearranger
class edu.uconn.mcb.lineageevolver.
JTT
(implements edu.uconn.mcb.lineageevolver.
SubstitutionMatrix
)
class edu.uconn.mcb.lineageevolver.
Lineage
(implements edu.uconn.mcb.lineageevolver.misc.
Visitable
)
class edu.uconn.mcb.lineageevolver.
LineageVisitor
(implements edu.uconn.mcb.lineageevolver.misc.
Visitor
)
class edu.uconn.mcb.lineageevolver.
LineageFork
class edu.uconn.mcb.lineageevolver.
RandomSelection
class edu.uconn.mcb.lineageevolver.
Recombiner
class edu.uconn.mcb.lineageevolver.
DiagonalRecombiner
class java.lang.Throwable (implements java.io.Serializable)
class java.lang.Exception
class java.lang.RuntimeException
class edu.uconn.mcb.lineageevolver.
AATranslator.InvalidAminoAcid
class edu.uconn.mcb.lineageevolver.
AATranslator.InvalidAminoAcid.InvalidAminoAcidByte
class edu.uconn.mcb.lineageevolver.
AATranslator.InvalidAminoAcid.InvalidAminoAcidChar
class edu.uconn.mcb.lineageevolver.
AATranslator.InvalidAminoAcid.InvalidAminoAcidInt
class edu.uconn.mcb.lineageevolver.
Genome.NoHGTProcessed
class edu.uconn.mcb.lineageevolver.
Lineage.HGTDenied
class edu.uconn.mcb.lineageevolver.
Recombiner.NoRecombineRegion
Interface Hierarchy
interface java.lang.Cloneable
interface edu.uconn.mcb.lineageevolver.
AminoAcid
(also extends edu.uconn.mcb.lineageevolver.
Substitutable
)
interface edu.uconn.mcb.lineageevolver.
Gene
interface edu.uconn.mcb.lineageevolver.
Substitutable
interface edu.uconn.mcb.lineageevolver.
AminoAcid
(also extends java.lang.Cloneable)
interface edu.uconn.mcb.lineageevolver.
SubstitutionMatrix
Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV
NEXT
FRAMES
NO FRAMES
All Classes