---- Initiating Tree Processing ---- Processed 10 time intervals of substitutions on 'realRoot' at time 0. Processed ForkEvent on 'level000->level0_0' at time 10. Processed 1 time intervals of substitutions on 'internal_AB-CD' at time 10. Processed 1 time intervals of substitutions on 'internal_EF-GH' at time 10. Successfully Processed HGT between Genomes internal_EF-GH (index 1) and internal_AB-CD (index 0) Processed HGT at time 11. Processed 7 time intervals of substitutions on 'internal_AB-CD' at time 11. Processed 7 time intervals of substitutions on 'internal_EF-GH' at time 11. Successfully Processed HGT between Genomes internal_EF-GH (index 1) and internal_AB-CD (index 0) Processed HGT at time 18. Processed 2 time intervals of substitutions on 'internal_AB-CD' at time 18. Processed 2 time intervals of substitutions on 'internal_EF-GH' at time 18. Processed ForkEvent on 'level0_0->level1_0' at time 20. Processed ForkEvent on 'level0_0->level1_1' at time 20. Processed 2 time intervals of substitutions on 'internal_A-B' at time 20. Processed 2 time intervals of substitutions on 'internal_C-D' at time 20. Processed 2 time intervals of substitutions on 'internal_E-F' at time 20. Processed 2 time intervals of substitutions on 'internal_G-H' at time 20. Successfully Processed HGT between Genomes internal_G-H (index 3) and internal_C-D (index 1) Processed HGT at time 22. Processed 8 time intervals of substitutions on 'internal_A-B' at time 22. Processed 8 time intervals of substitutions on 'internal_C-D' at time 22. Processed 8 time intervals of substitutions on 'internal_E-F' at time 22. Processed 8 time intervals of substitutions on 'internal_G-H' at time 22. Processed ForkEvent on 'level1_0->level2_0' at time 30. Processed ForkEvent on 'level1_0->level2_1' at time 30. Processed ForkEvent on 'level1_1->level2_2' at time 30. Processed ForkEvent on 'level1_1->level2_3' at time 30. Processed 9 time intervals of substitutions on 'A' at time 30. Processed 9 time intervals of substitutions on 'B' at time 30. Processed 9 time intervals of substitutions on 'C' at time 30. Processed 9 time intervals of substitutions on 'D' at time 30. Processed 9 time intervals of substitutions on 'E' at time 30. Processed 9 time intervals of substitutions on 'F' at time 30. Processed 9 time intervals of substitutions on 'G' at time 30. Processed 9 time intervals of substitutions on 'H' at time 30. Successfully Processed HGT between Genomes E (index 4) and B (index 1) Processed HGT at time 39. Processed 1 time intervals of substitutions on 'A' at time 39. Processed 1 time intervals of substitutions on 'B' at time 39. Processed 1 time intervals of substitutions on 'C' at time 39. Processed 1 time intervals of substitutions on 'D' at time 39. Processed 1 time intervals of substitutions on 'E' at time 39. Processed 1 time intervals of substitutions on 'F' at time 39. Processed 1 time intervals of substitutions on 'G' at time 39. Processed 1 time intervals of substitutions on 'H' at time 39. ---- Tree Processing Complete ---- Genome: Environmental Variables: (1.2890124,,1.3413042,1.3713064,1.4086154,1.2573907,1.4615619,1.6519208,2.4669125,2.9307246,1.937844) Genes: (0:1,0.17388159,(MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGIAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGFSIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVTVLAMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLLFIIGLIGYHPDTRISLYVGFAWIVVLLIGWMFKRRHDRQLAENQ),(0.4286,1.7181,2.7706,2.7706,1.7181,1.7181,0.0875,1.221,0.4286,1.7181,0.2505,0.8883,0.6354,0.0875,0.2505,0.2505,0.8883,0.2505,0.0875,0.2505,0.2505,0.2505,0.2505,0.2505,0.0875,0.0875,0.0875,0.0875,0.0875,0.0875,0.4286,0.2505,0.2505,0.6354,1.221,0.6354,0.2505,1.221,2.7706,0.2505,0.0875,0.0875,0.6354,0.4286,0.8883,0.4286,0.6354,0.0875,2.7706,0.2505,1.221,0.0875,1.7181,0.8883,1.221,0.4286,0.8883,0.0875,0.2505,0.6354,0.8883,0.2505,0.0875,0.0875,0.2505,0.4286,0.8883,1.7181,0.4286,0.6354,1.221,0.4286,0.8883,0.0875,0.0875,0.8883,0.8883,0.4286,0.2505,1.221,1.221,0.8883,0.6354,0.6354,1.221,1.221,0.2505,0.4286,0.4286,1.221,0.2505,0.2505,0.8883,0.2505,0.0875,0.8883,0.6354,1.7181,1.7181,0.6354,0.6354,0.4286,1.7181,0.2505,0.4286,0.6354,0.8883,0.0875,0.0875,0.8883,0.8883,2.7706,0.2505,0.6354,0.6354,1.221,0.0875,0.2505,0.6354,1.7181,0.6354,0.6354,0.8883,0.0875,0.6354,2.7706,0.6354,0.4286,1.7181,0.8883,0.8883,0.8883,0.4286,0.4286,1.7181,0.8883,0.8883,0.0875,0.4286,0.8883,0.2505,0.0875,0.4286,2.7706,0.2505,0.6354,0.0875,0.8883,0.0875,0.0875,0.0875,0.2505,0.2505,0.6354,0.0875,0.0875,0.2505,0.8883,0.2505,0.0875,0.2505,1.7181,0.2505,0.2505,0.6354,1.221,0.0875,1.7181,2.7706,0.8883,0.2505,2.7706,2.7706,2.7706,1.221,2.7706,1.221,1.7181,0.4286,2.7706,2.7706,0.6354,1.221,1.221,2.7706,0.2505,0.4286,0.2505,1.7181,0.8883,0.0875,0.0875,0.8883,0.2505,0.6354,0.8883,0.2505,2.7706,1.7181,0.6354,1.221,1.221,1.221,0.8883,0.6354,1.221,0.8883,0.0875,0.4286,0.2505,0.4286,0.4286,1.221,0.4286,0.2505,0.0875,0.2505,0.2505,0.2505,0.2505,0.0875,0.0875,0.4286,0.0875,0.2505,1.221,0.6354,0.0875,1.221,0.8883,0.6354,0.2505,0.4286,1.221,0.0875,0.2505,0.4286,0.4286,0.2505,1.7181,1.7181,0.0875,0.0875,0.6354,0.6354,0.0875,0.0875,0.2505,0.4286,0.2505,0.2505,1.7181,0.0875,0.2505,0.4286,0.6354,0.4286,1.221,0.2505,1.221,0.8883,2.7706,0.6354,1.7181,0.8883,2.7706,1.221,0.0875,0.0875,0.0875,0.0875,0.6354,0.8883,0.2505,1.221,1.7181,0.2505,0.2505,0.6354,0.4286,2.7706,0.2505,0.0875,0.6354,0.2505,0.0875,0.0875,0.4286,0.0875,0.0875,0.0875,0.0875,0.0875,0.4286,0.2505,0.0875,0.6354,1.221,0.0875,0.0875,0.8883,0.4286,0.4286,0.4286,0.2505,0.4286,0.0875,0.0875,0.2505,1.221,0.4286,0.2505,0.2505,1.221,1.7181,0.8883,0.8883,0.2505,0.2505,1.7181,2.7706,0.8883,2.7706,0.8883,0.4286,0.2505,2.7706,1.7181,1.7181,0.0875,0.0875,1.7181,1.7181,0.8883,0.4286,1.221,1.7181,0.4286,2.7706,2.7706,1.7181,0.6354,1.7181,1.7181,1.7181,0.2505,2.7706,0.4286,0.2505,0.4286,0.8883,1.7181,0.0875,2.7706,2.7706,0.4286,0.0875,0.8883,0.6354,0.2505,0.4286,0.4286,1.221,0.4286,0.6354,1.221,1.221,1.221,0.4286,1.7181,1.221,0.6354,1.7181,0.6354,0.0875,1.221,0.6354,0.2505,0.6354,0.6354,2.7706,0.6354,0.8883,0.8883,1.7181,1.221,2.7706,2.7706,2.7706,2.7706,2.7706,2.7706,2.7706,0.8883,1.7181,0.2505,0.6354,0.4286,0.6354,2.7706,1.7181,0.6354,2.7706,0.4286,0.8883,1.7181,1.7181,0.4286,0.6354,1.221,0.4286,0.4286,1.7181,2.7706,0.4286,0.6354,0.8883,2.7706,0.2505,2.7706,0.8883,1.221,2.7706,0.8883,0.4286,0.6354,1.7181,0.8883,0.2505,1.7181,0.8883,1.7181,2.7706,0.8883,1.7181,1.221,2.7706,2.7706,0.6354,1.221,1.7181,2.7706,1.7181,2.7706,2.7706,2.7706,2.7706,0.8883,2.7706,2.7706,2.7706,2.7706,2.7706,2.7706,2.7706,2.7706,2.7706)) Paralogs: 1 (1:1,0.45087135,(MLDANKLQQAVRQAYTQFHSLNGGQNADYIPFLANVPGQLAAVAIVTCDGNVYSAGDSDYRFALESISKVCTLALALEDVGPQAVQDKIGADPTGLPFNSVIALELHGGKPLSPLVNAGAIATTSLINAENVEQRWQRILHIQQQLAGEQVALSDEVNQSEQTTNFHNRAIAWLLYSAGYLYCDAMEACDVYTRQCSTLLNTIELATLGATLAAGGVNPLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLPGKSGVGGGILAVVPGVMGIAAFSPPLDEEGNSVRGQEMVASVAKQLGYNVFKG),(2.9354,2.9354,2.9354,2.9354,1.7576,1.2126,0.5902,2.9354,1.7576,1.7576,0.5902,1.2126,1.2126,0.5902,1.7576,1.7576,1.2126,1.7576,1.7576,0.8554,1.7576,0.207,1.2126,0.0619,1.2126,0.8554,0.0619,0.38,0.207,0.0619,0.0619,1.2126,0.0619,1.2126,0.8554,0.207,0.5902,1.2126,0.5902,1.7576,0.38,0.8554,0.207,0.5902,0.207,2.9354,0.38,2.9354,0.8554,0.5902,0.5902,0.5902,1.2126,2.9354,0.38,0.0619,0.207,0.8554,0.8554,1.7576,2.9354,0.0619,0.207,0.207,0.38,0.0619,0.207,0.0619,0.0619,0.5902,0.5902,0.38,0.5902,0.38,0.0619,0.207,0.38,1.2126,1.2126,1.7576,0.207,2.9354,1.2126,2.9354,0.207,1.7576,0.5902,0.5902,0.207,0.207,0.8554,0.207,0.207,0.207,0.207,1.2126,0.8554,0.0619,0.0619,0.0619,0.38,0.38,0.8554,0.207,0.5902,2.9354,0.8554,0.5902,0.5902,0.5902,0.38,1.2126,0.0619,0.0619,0.207,0.207,0.0619,0.207,0.0619,0.0619,0.0619,0.5902,0.38,0.38,0.207,0.207,0.207,1.7576,2.9354,1.7576,0.8554,0.8554,1.7576,1.7576,1.2126,1.7576,1.2126,2.9354,0.207,0.5902,1.7576,1.7576,0.8554,0.8554,1.7576,0.8554,0.38,0.8554,1.7576,1.7576,0.38,2.9354,0.5902,0.38,1.7576,0.8554,0.207,0.8554,1.2126,0.0619,0.0619,1.2126,1.7576,0.0619,0.38,0.8554,0.8554,0.0619,0.5902,0.38,0.207,0.207,0.8554,0.5902,0.207,0.8554,0.38,0.5902,0.38,1.2126,0.38,1.2126,1.2126,0.5902,0.5902,1.7576,1.7576,0.38,0.5902,0.38,1.2126,0.0619,0.207,0.8554,0.207,0.0619,0.0619,0.5902,1.7576,0.207,0.38,0.38,2.9354,0.38,0.207,0.0619,0.38,0.38,0.8554,0.8554,0.38,0.207,0.0619,0.38,1.2126,0.0619,0.5902,0.38,0.207,1.7576,0.207,1.2126,0.8554,1.2126,0.5902,0.8554,0.8554,2.9354,1.2126,1.2126,0.8554,2.9354,1.7576,0.207,0.207,0.207,0.5902,0.0619,0.8554,0.0619,0.5902,0.0619,0.207,0.0619,0.38,2.9354,0.207,0.0619,0.5902,0.207,0.5902,0.38,1.7576,0.38,0.0619,0.207,0.0619,0.5902,0.0619,0.0619,0.0619,0.0619,0.5902,0.0619,0.207,0.0619,0.5902,0.5902,0.5902,0.38,0.207,1.2126,1.7576,0.5902,0.38,0.207,0.5902,0.5902,0.38,0.207,0.0619,1.7576,0.0619,0.207,2.9354,1.2126,0.207,0.0619,0.0619,0.38,0.38,0.5902,1.2126,0.8554,0.5902,0.5902,0.5902,2.9354,0.38,0.207,2.9354,1.2126,0.8554,0.8554,0.8554,0.207,0.38,0.38,1.2126,2.9354)) Paralogs: 1 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Paralogs: 1 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Paralogs: 1 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Paralogs: 1 Genome: Environmental Variables: (1.2211654,,1.2595491,1.3813663,1.325515,1.3960259,1.314124,1.6367378,2.000107,2.5379872,2.9098706) Genes: 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Paralogs: 1 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Paralogs: 1 Genome: Environmental Variables: (1.2675946,,1.3038656,1.4372045,1.8966224,1.3147111,1.3990725,1.4286013,2.715926,2.570643,3.429453) Genes: 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Paralogs: 1 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Paralogs: 1 Genome: Environmental Variables: (1.2921816,,1.3151706,1.3399496,1.7662209,1.410861,1.4003385,1.7784858,2.2120306,2.9480765,2.5550275) Genes: 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Paralogs: 1 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Paralogs: 1 Genome: Environmental Variables: (1.2259246,,1.4318913,1.309118,1.7709134,1.6438248,1.1495899,1.9908447,1.0203241,2.0767872,2.80598) Genes: 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Paralogs: 1 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Paralogs: 1 Genome: Environmental Variables: (1.1667997,,1.4198698,1.124346,1.5313487,1.5770013,1.1130434,2.0319924,1.5631729,1.7708482,2.7186337) Genes: 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Paralogs: 1 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Paralogs: 1 Genome: Environmental Variables: (1.2102734,,1.3571036,1.3406475,1.724315,1.7325093,1.1907835,1.5881722,1.489664,1.9562559,2.5616627) Genes: 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Paralogs: 1 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Paralogs: 1 Genome: Environmental Variables: (1.292161,,1.4842023,1.3139911,1.6104728,1.8343322,1.1236739,1.635939,1.3337418,2.3180559,2.5185242) Genes: 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Paralogs: 1 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Paralogs: 1