Uses of Interface
edu.uconn.mcb.lineageevolver.SubstitutionMatrix

Packages that use SubstitutionMatrix

edu.uconn.mcb.lineageevolver

Provides all basic, universal LineageEvolver classes directly, and serves as a parent for all other LineageEvolver packages.

Uses of SubstitutionMatrix in edu.uconn.mcb.lineageevolver

Classes in edu.uconn.mcb.lineageevolver that implement SubstitutionMatrix

class

JTT JTT Substitution Matrix.

Fields in edu.uconn.mcb.lineageevolver declared as SubstitutionMatrix

private static SubstitutionMatrix

ASRVByteAAGene._smtrx The currently employed substitution matrix for this gene.

Methods in edu.uconn.mcb.lineageevolver with parameters of type SubstitutionMatrix

void	Substitutable.substitute(SubstitutionMatrix sm) Induces substitution in this substitutable object.
void	ByteAminoAcid.substitute(SubstitutionMatrix sm)