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Packages that use SubstitutionMatrix | |
edu.uconn.mcb.lineageevolver | Provides all basic, universal LineageEvolver classes directly, and serves as a parent for all other LineageEvolver packages. |
Uses of SubstitutionMatrix in edu.uconn.mcb.lineageevolver |
Classes in edu.uconn.mcb.lineageevolver that implement SubstitutionMatrix | |
class |
JTT
JTT Substitution Matrix. |
Fields in edu.uconn.mcb.lineageevolver declared as SubstitutionMatrix | |
private static SubstitutionMatrix |
ASRVByteAAGene._smtrx
The currently employed substitution matrix for this gene. |
Methods in edu.uconn.mcb.lineageevolver with parameters of type SubstitutionMatrix | |
void |
Substitutable.substitute(SubstitutionMatrix sm)
Induces substitution in this substitutable object. |
void |
ByteAminoAcid.substitute(SubstitutionMatrix sm)
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