Uses of Interface
edu.uconn.mcb.lineageevolver.SubstitutionMatrix

Packages that use SubstitutionMatrix
edu.uconn.mcb.lineageevolver Provides all basic, universal LineageEvolver classes directly, and serves as a parent for all other LineageEvolver packages. 
 

Uses of SubstitutionMatrix in edu.uconn.mcb.lineageevolver
 

Classes in edu.uconn.mcb.lineageevolver that implement SubstitutionMatrix
 class JTT
          JTT Substitution Matrix.
 

Fields in edu.uconn.mcb.lineageevolver declared as SubstitutionMatrix
private static SubstitutionMatrix ASRVByteAAGene._smtrx
          The currently employed substitution matrix for this gene.
 

Methods in edu.uconn.mcb.lineageevolver with parameters of type SubstitutionMatrix
 void Substitutable.substitute(SubstitutionMatrix sm)
          Induces substitution in this substitutable object.
 void ByteAminoAcid.substitute(SubstitutionMatrix sm)