edu.uconn.mcb.lineageevolver.graph
Class EdgeListGraphTopology.EdgeData.SubstitutionEvent

java.lang.Object
  edu.uconn.mcb.lineageevolver.graph.EdgeListGraphTopology.EdgeData.Event
      edu.uconn.mcb.lineageevolver.graph.EdgeListGraphTopology.EdgeData.GenomeEvent
          edu.uconn.mcb.lineageevolver.graph.EdgeListGraphTopology.EdgeData.SubstitutionEvent

All Implemented Interfaces:

java.lang.Comparable, GraphTopologyEvent

Enclosing class:

EdgeListGraphTopology.EdgeData

protected class EdgeListGraphTopology.EdgeData.SubstitutionEvent

extends EdgeListGraphTopology.EdgeData.GenomeEvent

Event produced for carrying out substitution. This event commonly provides more than one substitution on a given Genome. Substitutions are provided for in batches for efficiency.

Author:

Hasan Khalil

Field Summary

Fields inherited from class edu.uconn.mcb.lineageevolver.graph.EdgeListGraphTopology.EdgeData.GenomeEvent

edgeData, time, visitor

Constructor Summary

EdgeListGraphTopology.EdgeData.SubstitutionEvent()
Default constructor for objects of type SubstitutionEvent.

Method Summary

void	setSubstitutions(int substitutions) Sets the number of substitutions to be processed during this substitution event.

Methods inherited from class edu.uconn.mcb.lineageevolver.graph.EdgeListGraphTopology.EdgeData.GenomeEvent

applyTo, compareTo

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EdgeListGraphTopology.EdgeData.SubstitutionEvent

public EdgeListGraphTopology.EdgeData.SubstitutionEvent()

Default constructor for objects of type SubstitutionEvent.

Method Detail

setSubstitutions

public void setSubstitutions(int substitutions)

Sets the number of substitutions to be processed during this substitution event.

Parameters:

substitutions - the number of substitutions to be processed during this substitution event.