Uses of Interface
edu.uconn.mcb.lineageevolver.graph.GraphNode

Packages that use GraphNode

edu.uconn.mcb.lineageevolver.graph

Provides graph data structure interface and implementation.

Uses of GraphNode in edu.uconn.mcb.lineageevolver.graph

Classes in edu.uconn.mcb.lineageevolver.graph that implement GraphNode

class

EdgeListNode Implementation of GraphNode interface for use with EdgeListGraph objects.

Methods in edu.uconn.mcb.lineageevolver.graph that return GraphNode

GraphNode	EdgeListGraphTopology.addNode(java.lang.Object data)
GraphNode[]	EdgeListGraph.getNodes(GraphEdge e)
GraphNode	EdgeListGraph.addNode(java.lang.Object data)
GraphNode[]	EdgeListGraph.getNodes()
GraphNode[]	EdgeListGraph.getAdjacentNodes(GraphNode v)
GraphNode[]	DirectedGraph.getNodes(GraphEdge e) Retrieves the two nodes connected by a given edge.
GraphNode	DirectedGraph.addNode(java.lang.Object data) Adds a node to this graph.
GraphNode[]	DirectedGraph.getNodes() Retrieves all nodes in this graph.
GraphNode[]	DirectedGraph.getAdjacentNodes(GraphNode v) Retrieves all nodes directly adjacent to the given node.

Methods in edu.uconn.mcb.lineageevolver.graph with parameters of type GraphNode

Genome	GraphTopology.getGenome(GraphNode v) Returns genome stored in the given node.
java.lang.String	GraphTopology.getName(GraphNode v) Returns the name of the given node.
void	GraphTopology.setGenome(GraphNode v, Genome g) Sets the genome for a given node.
void	GraphTopology.setName(GraphNode v, java.lang.String name) Sets the name for a given node.
Genome	EdgeListGraphTopology.getGenome(GraphNode v)
java.lang.String	EdgeListGraphTopology.getName(GraphNode v)
void	EdgeListGraphTopology.setGenome(GraphNode v, Genome g)
void	EdgeListGraphTopology.setName(GraphNode v, java.lang.String name)
GraphEdge	EdgeListGraphTopology.addEdge(java.lang.Object data, GraphNode origin, GraphNode destination)
java.lang.Object	EdgeListGraphTopology.getData(GraphNode v)
void	EdgeListGraphTopology.setData(GraphNode v, java.lang.Object data)
GraphEdge[]	EdgeListGraph.getEdges(GraphNode v)
GraphEdge	EdgeListGraph.addEdge(java.lang.Object data, GraphNode origin, GraphNode destination)
java.lang.Object	EdgeListGraph.getData(GraphNode v)
void	EdgeListGraph.setData(GraphNode v, java.lang.Object data)
GraphNode[]	EdgeListGraph.getAdjacentNodes(GraphNode v)
GraphEdge[]	DirectedGraph.getEdges(GraphNode v) Retrieves all edges outgoing from a given node.
GraphEdge	DirectedGraph.addEdge(java.lang.Object data, GraphNode origin, GraphNode destination) Adds an edge to this graph.
java.lang.Object	DirectedGraph.getData(GraphNode v) Returns the data stored inside a given node.
void	DirectedGraph.setData(GraphNode v, java.lang.Object data) Sets the data for a given node.
GraphNode[]	DirectedGraph.getAdjacentNodes(GraphNode v) Retrieves all nodes directly adjacent to the given node.