Uses of Interface
edu.uconn.mcb.lineageevolver.graph.GraphTopology

Packages that use GraphTopology

edu.uconn.mcb.lineageevolver	Provides all basic, universal LineageEvolver classes directly, and serves as a parent for all other LineageEvolver packages.
edu.uconn.mcb.lineageevolver.config	This package provides configuration interfaces and classes.
edu.uconn.mcb.lineageevolver.graph	Provides graph data structure interface and implementation.

Uses of GraphTopology in edu.uconn.mcb.lineageevolver

Fields in edu.uconn.mcb.lineageevolver declared as GraphTopology

private GraphTopology

Lineage._tree The tree topology to follow for this lineage.

Methods in edu.uconn.mcb.lineageevolver with parameters of type GraphTopology

abstract void	LineageVisitor.applyToLineage(java.util.ArrayList edgeList, GraphTopology tree) Applies this visitor to a given Lineage.
void	LineageFork.applyToLineage(java.util.ArrayList edgeList, GraphTopology tree)
private void	LineageFork.fork(java.util.ArrayList edgeList, GraphTopology tree) Processes an n-furcation in the tree.

Uses of GraphTopology in edu.uconn.mcb.lineageevolver.config

Fields in edu.uconn.mcb.lineageevolver.config declared as GraphTopology

protected GraphTopology

Configuration._tree The topology.

Methods in edu.uconn.mcb.lineageevolver.config that return GraphTopology

GraphTopology

Configuration.getTree()

Uses of GraphTopology in edu.uconn.mcb.lineageevolver.graph

Classes in edu.uconn.mcb.lineageevolver.graph that implement GraphTopology

class

EdgeListGraphTopology Implementation of a GraphTopology using an EdgeListGraph