edu.uconn.mcb.lineageevolver
Class GenomeEvolver

java.lang.Object
  edu.uconn.mcb.lineageevolver.GenomeVisitor
      edu.uconn.mcb.lineageevolver.GenomeEvolver

All Implemented Interfaces:

Visitor

public class GenomeEvolver

extends GenomeVisitor

GenomeVisitor subclass encapsulating generic 'evolution'.

Author:

Lina Pezzella, Hasan Khalil

See Also:

Genome.evolve(int)

Field Summary

private int

_substitutions The length of evolution that this visitor will process.

Constructor Summary

GenomeEvolver()
Default constructor for Objects of type GenomeEvolver.

GenomeEvolver(int substitutions)
Constructor specifying time for Objects of type GenomeEvolver

Method Summary

void	applyToGenome(Genome g) Induces 'evolution' on the given genome.
void	setSubstitutions(int time) Sets the duration of evolution for this visitor.

Methods inherited from class edu.uconn.mcb.lineageevolver.GenomeVisitor

applyTo

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

_substitutions

private int _substitutions

The length of evolution that this visitor will process.

Constructor Detail

GenomeEvolver

public GenomeEvolver()

Default constructor for Objects of type GenomeEvolver. Does nothing.

GenomeEvolver

public GenomeEvolver(int substitutions)

Constructor specifying time for Objects of type GenomeEvolver

Parameters:

substitutions - the number of substitutions to process.

Method Detail

applyToGenome

public void applyToGenome(Genome g)

Induces 'evolution' on the given genome. Delegates 'evolution' to the provided genome.

Specified by:

applyToGenome in class GenomeVisitor

Parameters:

g - the genome to process evolution for.

See Also:

GenomeVisitor.applyToGenome(edu.uconn.mcb.lineageevolver.Genome), Genome.evolve(int)

setSubstitutions

public void setSubstitutions(int time)

Sets the duration of evolution for this visitor.

Parameters:

time - the duration of evolution.