edu.uconn.mcb.lineageevolver
Class GenomeRearranger

java.lang.Object
  edu.uconn.mcb.lineageevolver.GenomeVisitor
      edu.uconn.mcb.lineageevolver.GenomeRearranger

All Implemented Interfaces:

Visitor

public class GenomeRearranger

extends GenomeVisitor

GenomeVisitor subclass encapsulating the rearrangement process.

Author:

Lina Pezzella, Hasan Khalil

Constructor Summary

GenomeRearranger()

Method Summary

void	applyToGenome(Genome g) Applies rearrangement on the given genome.

Methods inherited from class edu.uconn.mcb.lineageevolver.GenomeVisitor

applyTo

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GenomeRearranger

public GenomeRearranger()

Method Detail

applyToGenome

public void applyToGenome(Genome g)

Applies rearrangement on the given genome. Delegates rearrangement to the Genome. Uses symmetric reversals.

Specified by:

applyToGenome in class GenomeVisitor

Parameters:

g - the Genome to apply this visitor to.

See Also:

GenomeVisitor.applyToGenome(edu.uconn.mcb.lineageevolver.Genome), Genome.symmetricReversal()