A B C D E F G H I J K L M N O P R S T V _

T

time - Variable in class edu.uconn.mcb.lineageevolver.graph.EdgeListGraphTopology.EdgeData.Event

The number of time intervals along this event's edge that should be processed before this event is processed.

time - Variable in class edu.uconn.mcb.lineageevolver.graph.EdgeListGraphTopology.EdgeData

The number of time units along this branch.

toByte(int) - Static method in class edu.uconn.mcb.lineageevolver.AATranslator

Converts an int AminoAcid encoding to its corresponding byte encoding, without error checking.

toByte(char) - Static method in class edu.uconn.mcb.lineageevolver.AATranslator

Returns the byte representation of a given char, without error checking.

toChar(int) - Static method in class edu.uconn.mcb.lineageevolver.AATranslator

Converts an int AminoAcid encoding to its corresponding char encoding, without error checking.

toChar(byte) - Static method in class edu.uconn.mcb.lineageevolver.AATranslator

Returns the char representation of a given byte, without error checking.

toInt(char) - Static method in class edu.uconn.mcb.lineageevolver.AATranslator

Converts a char AminoAcid encoding to its corresponding int encoding, without error checking.

toInt(byte) - Static method in class edu.uconn.mcb.lineageevolver.AATranslator

Converts a byte AminoAcid encoding to its corresponding int encoding, without error checking.

toString() - Method in class edu.uconn.mcb.lineageevolver.ASRVByteAAGene

toString() - Method in class edu.uconn.mcb.lineageevolver.ByteAminoAcid

toString() - Method in class edu.uconn.mcb.lineageevolver.Genome

totalSubs - Variable in class edu.uconn.mcb.lineageevolver.Genome

The age of this genome, including the age of its ancestors, in the number of substitutions it has undergone.