A B C D E F G H I J K L M N O P R S T V _

C

Configuration - class edu.uconn.mcb.lineageevolver.config.Configuration.

Common superclass for all configuration objects.

Configuration() - Constructor for class edu.uconn.mcb.lineageevolver.config.Configuration

Default constructor for Configuration objects.

clone() - Method in class edu.uconn.mcb.lineageevolver.ASRVByteAAGene

clone() - Method in interface edu.uconn.mcb.lineageevolver.AminoAcid

clone() - Method in class edu.uconn.mcb.lineageevolver.ByteAminoAcid

clone() - Method in interface edu.uconn.mcb.lineageevolver.Gene

All genes must be cloneable.

clone() - Method in class edu.uconn.mcb.lineageevolver.Genome

compareTo(Object) - Method in class edu.uconn.mcb.lineageevolver.graph.EdgeListGraphTopology.EdgeData.Event

cur - Variable in class edu.uconn.mcb.lineageevolver.graph.EdgeListGraphTopology.EdgeData

The current number of time units traversed along this branch.