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| Packages that use edu.uconn.mcb.lineageevolver.graph | |
| edu.uconn.mcb.lineageevolver | Provides all basic, universal LineageEvolver classes directly, and serves as a parent for all other LineageEvolver packages. |
| edu.uconn.mcb.lineageevolver.config | This package provides configuration interfaces and classes. |
| edu.uconn.mcb.lineageevolver.graph | Provides graph data structure interface and implementation. |
| Classes in edu.uconn.mcb.lineageevolver.graph used by edu.uconn.mcb.lineageevolver | |
| GraphEdge
Common interface for all graph edge objects. |
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| GraphTopology
Common interface for graph objects to be used as topologies. |
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| Classes in edu.uconn.mcb.lineageevolver.graph used by edu.uconn.mcb.lineageevolver.config | |
| GraphTopology
Common interface for graph objects to be used as topologies. |
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| Classes in edu.uconn.mcb.lineageevolver.graph used by edu.uconn.mcb.lineageevolver.graph | |
| DirectedGraph
Common interface for all graph objects. |
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| EdgeListEdge
GraphEdge implementation for use with EdgeListGraph objects. |
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| EdgeListGraph
Comment for this type goes here. |
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| EdgeListGraphTopology.EdgeData
Encapsulation class used for storing multiple items inside an edge for EdgeListGraphTopology objects. |
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| EdgeListGraphTopology.EdgeData.Event
Encapsulation class used for storing Event information inside an EdgeData object. |
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| EdgeListGraphTopology.EdgeData.GenomeEvent
Common abstract class for all events dealing directly with Genomes, as a GenomeVisitor. |
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| EdgeListGraphTopology.EdgeData.LineageEvent
Common abstract class for all events dealing with Lineages. |
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| EdgeListGraphTopology.EdgeData.SubstitutionEvent
Event produced for carrying out substitution. |
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| EdgeListNode
Implementation of GraphNode interface for use with EdgeListGraph objects. |
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| GraphEdge
Common interface for all graph edge objects. |
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| GraphNode
Common interface for all graph node objects. |
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| GraphTopology
Common interface for graph objects to be used as topologies. |
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| GraphTopologyEvent
Common interface for classes representing an event at some given moment on a branch. |
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